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Glen research/Pac-dA-CE Phosphoramidite/1kit/10-1601-02

Technical Documents
Description
Details
Dilution/Coupling Data
Related Products

Technical Documents

Safety Data Sheet

Procedure for UltraMild Deprotection of Oligonucleotides

Glen Report 11.25: Alternatives to Expedite Monomers


Description

An alternative protecting scheme for the normal CE phosphoramidites should allow UltraMILD deprotection and should not react with a wider variety of tags and labels. A set of monomers using phenoxyacetyl (Pac) protected dA and 4-isopropyl-phenoxyacetyl (iPr-Pac) protected dG, along with acetyl protected dC, met the desired criteria for UltraMILD deprotection.

We recommend the use of phenoxyacetic anhydride (Pac2O) in Cap A. This modification removes the possibility of exchange of the iPr-Pac protecting group on the dG with acetate from the acetic anhydride capping mix. Cleavage and deprotection can be carried out in 2 hours at room temperature with ammonium hydroxide or 4 hours with 0.05M potassium carbonate in methanol.

Details

Usage

  • Coupling: No changes needed from standard method recommended by synthesizer manufacturer.To avoid any exchange of the iPr-Pac group on the dG with acetyl, use the UltraMild Cap Mix A (40-4210-xx/ 40-4212-xx).
  • Deprotection: UltraMILD deprotection: 0.05M Potassium Carbonate in Methanol, 4 hours at Room Temperature OR 2 hours at Room Temperature in 30% Ammonium Hydroxide
Specifications
DiluentAnhydrous Acetonitrile
StorageFreezer storage, -10 to -30°C, dry
Stability24 hours

Dilution/Coupling Data

The table below show pack size data and, for solutions, dilution and approximate coupling based on normal priming procedures.

ABI 392/394

Catalog #Pack SizeGrams/Pack0.1M Dil. (mL)Approximate Number of Additions
LV40LV20040nm0.2μm1μm10μm
10-1601-020.25 g.25grams2.8280.6748.430.252216.134.03
10-1601-050.5 g.5grams5.63174.33104.665.3847.5534.878.72
10-1601-101.0 g1grams11.26362217.2135.7598.7372.418.1

Expedite

Catalog #Pack SizeGrams/PackDilution (mL)Approximate Number of Additions
Molarity50nm0.2μm1μm15μm
10-1601-020.25 g.25grams4.20.0777.648.535.274.85
10-1601-050.5 g.5grams8.40.07161.610173.4510.1
10-1601-101.0 g1grams16.810.07329.8206.13149.9120.61


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